Okay so I have thoroughly cleaned the crap out of everything. I made sure that i removed all of the old gasket remnants and have wiped everything clean. My question is, if there are any metal shaving left at all eg. in the rings or in the crevices of the crank will that cause me problems or will the new oil flush that out to the oil filter? Should I pull all of the pistons out and clean those too? If I do that will I need to replace the piston rings and the sleeve's for the rods??
bertus, one question, maybe one anyway....

How much metal did you find in the pan?
If there were remnants of metal in the pan (especially small shavings), I would pull the entire motor apart and clean everything...If you pull the pistons and rods carefully, and not mix up the caps (wrecking yard paint pen works really well for us older far sighted types) you can reuse the rings and bearings with little to no issues, you will need a piston ring compressor, I highly recomend the tapered ring types, not much money and super fast (compared to the band type).
The only thing is, you have to buy the one for the pistons you have and they only work for that sized piston. (I have like seven different sizes).

The pistons should go back in the same hole they came out of, as do the bearings.

The problem with leaving it together and running it is you will always have doubts in your head everytime you start the boat.....

If there is a small particle of metal (especially hardened steel) stuck in the ring lands, it will cut the cylinder like a reciprocating saw and destroy the honed surface, possible damaging a piston.

For the three or four hours it would take to pull it down, clean and reassemble the motor, I think the piece of mind would be worth while. You already have it this far......Maybe just me

Hows that?
GT