Hi GT,
I have been doing research and i think i have come up to one of two solutions
Heres a pic of the manifolds i have

Heres a better pic from the internet

From the research i have done it looks like i ultimately have two options, one is to run "cold manifolds" the other is for "warm manifolds".
Here are some pictures with the cooling paths,
STOCK

"WARM"

"COLD"

Im leaning towards going with the "cold" set-up. any reasons that i shouldnt? Any other suggestions you want to make?
Heres a picture of my stock setup as well

Also, it sounds like you have a few parts lying around, i am searching for the stuff to do my "Thru-hull" conversion. It looks like i will need 4 90* elbows, some 4" rubber and steel tubing and of course tips. Do you have anything lying around you might be interested in selling?
Thanks again!
Steve