Sounds like there is no heat riser block off plates in the manifold, the wiring should not be anywhere close to that area.
Typically there are metal clamps that keep the loom tight to the valve cover, not the manifold, more than likely got discarded during a gasket change. If the heat riser is not used for a choke spring, be sure to block off the riser with the supplied plates the next time you have the manifold off...
GT