Well after some sound advice from Jim I continued my bilge/ass end project this weekend.
I started with Goof Off to get the adhesive from the carpet off so it would not load up the sander as often. I highly recommend Goof Off for adhesive removal. Works Great.
Here is the stringer holes dowled and epoxied. I used oak dowels and Sig Epoxy from the hobby store.
One Tip Jim shared is do not be afraid to drill big holes in the stringers. A few of my holes were oblong shaped and I ended up drilling out the first 1/2 dowels and wend to 3/4 and a much better fit.

Here is the first round of sanding done. I used 36 grit paper. I sanded a ditch where the dowels are so I could build them up with mat and glass.

Here is another view of the sanding process. I sanded until I hit porous mat so the resin would adhere better also as per Jims instructions

Here is the 1st layer of resin on the port side of the boat. I was gonna start in the bilge but a little water keeps seeping out from the front of the boat so I started there. There is also 2 layers of glass on the dowel areas on the stringer now. I am doing 1 small area at a time so if something does not turn out right I don't have a big area to repair. One tip Jim gave me is to set the resin up for a fairly slow cure. So I cleaned the area with Goo Gone and acetone several times and gave it a shot. It is curing as we speak and I will keep ypu posted. So far I have about 20 hours labor and $100 spent on materials and some tools. Not a bad start considering I wan qouted between $700 and $840 around town.
