I am coming to the party a little late here, but.....Welcome to the fun.
That looks like a really nice little boat you have there.
One of the great things about jet boats is the "kid friendliness". That being said, the opposite of that is when over transom headers are installed.
They are hot as Hades, loud, limit what lakes you can use the boat on and simply obnoxious.
WOW, I sounded like my dad there for a minute..

If you like the boat but the noise/heat are too much for you then I would recommend installing logs and snails. They are many times quieter than headers, you can literally set your hand on the log when your engine is running without burning yourself and adds valuable storage space to the boat.
The cons are pretty straight forward, they rob a bit of horsepower (I would say 5-10% is fair), you need to cut large holes in the transom like crewchief22 says and you don't have them laying around in your garage..
But for you would make the boat way more "enjoyable"
If you are seriously considering swapping out the headers for logs, I have a beautiful set of polished Hardin logs and snails with the outlets and new flappers I can make you one hell of a deal on.
Hit me with a PM and maybe we can work something out.
Forgive me if I missed something in previous posts, I'll be honest, I did not read all of the entries, sort of skimmed through it, I normally read every word before posting, but just taking a quick lunch break on some projects and saw this....

GT